Machine learning algorithm | Observed extra accuracy |
---|---|
Lasso (glmnet) | 0% (reference) |
Lasso with first-order interactions (glmnet) | +18% |
Random forests (randomForest) | +20% |
Support vector machine (e1071) | +16% |
Gaussian processes (kernlab) | +12% |
Name of MAREoS | More information on the MAREoS | Machine learning algorithm | Average relative accuracy change in datasets with EoS (RAC_{EoS}) | Average relative accuracy change in datasets with true effects (RAC_{true}) | EoS-removal effectiveness |
---|---|---|---|---|---|
ComBat |
http://enigma.ini.usc.edu/ protocols/statistical-protocols/ |
Lasso (glmnet) | 97% | 0% | 97% |
Random forests (randomForest) | 96% | 0% | 96% | ||
Support vector machine (e1071) | 92% | 0% | 92% | ||
Gaussian processes (kernlab) | 99% | 0% | 99% |
Name of MAREoS | More information on the MAREoS | Machine learning algorithm | Average relative accuracy change in datasets with EoS (RAC_{EoS}) | Average relative accuracy change in datasets with true effects (RAC_{true}) | EoS-removal effectiveness |
---|---|---|---|---|---|
ComBat |
http://enigma.ini.usc.edu/ protocols/statistical-protocols/ |
Lasso with first-order interactions (glmnet) | 0% | 0% | 0% |
Random forests (randomForest) | 84% | 1% | 84% | ||
Support vector machine (e1071) | 62% | 1% | 62% |